Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

BIE::AbsFilter	Absolute value Filter: Computes the absolute value of the input x
BIE::AdaptiveIntegration	This Integration class tries to compute the value of the integral over the tile to a specified accuracy by successive subdivision
BIE::AdaptiveLegeIntegration	Gauss-Legendre integration in two-dimensional cell
AData	This is a value container
BIE::AdditionFilter	Addition Filter: Computes the sum of two real input fields
BIE::AlwaysIncreaseResolution	A frontier mutator
ArchiveException	Requested archive does not exist
ArchiveFileOpenException	Can not open requested archive file
BIE::ArrayType	For CLI to handle arrays
BIE::AsciiLexer	A simple ascii lexer used by the RecordInputStream_Ascii class
AssignStatement	This class handles assignment statements made in CLI
BIE::AttachedFilterException	Handle attached filter related exceptions in DataStreams
BIE::AverageFilter	Average Filter: Computes the mean of a set of reals
Backend	Backend: Virtual class for different types of backends
BIE::BadParameterException	Exception generated for a bad parameter value
BIE::BadRangeException	Handle Bad range related exception in DataStreams
BIE::BaseDataTree	BaseDataTree instances hold the input data in a summarized/decimated form
BIE::BasicType	Type descriptors for basic types: string, real, integer, and boolean
BIE::BIEACG	BIEACG wraps the ACG class to provide parallel save and load
BIE::BIEException	Defines an Error Handler base class BIEException to handle exceptions
BIE::Bin	Instances of BIE::Bin define histogram bins
BIE::BinaryNode	Special Node sub class for the case where nodes have two children
BIE::BinaryTessellation	Recursive, hierarchical tessellation of space into equally sized bins
BIE::BinnedDistribution	Abstract: sample distribution with bins
BIE::BinnedLikelihoodFunction	The default binned likelihood function
BoostLoadEngine	A load engine using the boost serialization backend
BoostSaveEngine	Save engine based on the boost serialization backend
BoostSerializationException	Exception thrown when the serialization fails
BIE::CachedModel	Class to define cached model
BIE::CacheGalaxyModel	Single-dimensional cache element for galaxy model
BIE::CacheGalaxyModelGrid	Multidimensional cache element for galaxy model
CallExpr	Handles calls to methods and constructors made in CLI
Chain	Define, access and manipulate the state of a Markov Chain
CheckpointManager	Class to manage checkpoint calls
BIE::ClassNotExistException	Handle class not exist related exceptions in cli
CliArgList	Used to hold actual (i.e
CLICheckpointManager	Class to trigger checkpoints on demand or after some other user set condition such as number of steps or run time
BIE::CliCommandThread	CliCommandThread: For communicating with CLI
BIE::cliDistribution	Wrapper class for vector<BinnedDistribution*> for cli instantiation
BIE::CliException	Handle cli related exceptions
CLILoadManager	CLILoadManager: Deals with nitty-gritty bits of persistence mechanism
BIE::CliOutputReceiveThread	Receive data through pipe from running simulation
CLISaveManager	CLISaveManager: Deals with nitty-gritty bits of persistence mechanism
CLIUserState	Constructs a CLI user state that holds state information:
BIE::CMD	Binned CMD model in absolute magnitudes with user supplied offset (e.g
BIE::CMDCache	Cache object for color-magnitude diagram
BIE::CMDModelCache	Simple test galaxy model with a quadrupole
ConfigFileReader	This class is a wrapper to the Common C++ class used for INI file processing and provides a few additional conveniences for config file management
BIE::ConsoleLogThread	Thread to manage console output for tesstooldriver
BIE::ContainerTessellation	A tessellation class for holding sets of spacially disjoint tessellations
BIE::Converge	Abstract: accumulate statistics on MCMC chain and define a boolean method decide convergence
BIE::CosBSquareTile	SquareTile with sin(b) measure in Y-direction
BIE::CosineFilter	Cosine Filter: Computes the cosine of the input x
BIE::CountConverge	A simple implementation of Converge Counts number of interations and cumulated statistics based on SampleDistribution class provided on instantiation
BIE::CumSampleHistogram	Implements a histogram that supports access as a cumulative histogram
BIE::CursorTessellation	A pseudo tessellation to support point bayesian simulation for sequential update
BIE::Data	Defines a single data point, now with multiple attributes
BIE::DataPointCountHeuristic	This heuristic is based on the number of points contained in each tile
BIE::DataSetFieldException	Handle set field related exceptions
BIE::DataTree	DataTree instances hold the input data in a summarized/decimated form
BIE::DifferentialEvolution	Implements the Differential Evolution (DE) algorithm following the manuscript of Cajo J
BIE::DimNotMatchException	Handle dimension not matched related exceptions
BIE::DimNotSupportException	Handle dimension not supported related exceptions
BIE::DimValueException	Handle dimension value related exceptions
BIE::Dirichlet	Dirichlet distribution
BIE::DirichletMomException	Handle dirichlet mom related exceptions
BIE::DirichletSumException	Handle dirichlet sum related exceptions
BIE::DirichletValueException	Handle dirichlet value related exceptions
BIE::Distribution	Abstract class that defines the general properties of a distriubtion
BIE::DivisionFilter	Division Filter: Computes the result of dividing one real input field by another ( numerator / divisor )
BIE::DuplicateFieldException	Handle duplicate filed related exceptions in DataStreams
BIE::ElapsedTime	An MPI stop watch
BIE::EmptyDataTree	EmptyDataTree constructs a tree with no data and a Universal "singleton" tessellation for use with a Likelihood implementation that specifies its own data
BIE::EndofStreamException	Handle end of streams related exceptions in DataStreams
BIE::Ensemble	Ensemble caches an group of posterior states in a vector and provides member functions to characterize the posterior from this distribution and produce statistical diagnostics on the convergence of the simulation
BIE::EnsembleDisc	Caches an group of posterior states in a vector and provides member functions to characterize the posterior from this distribution and produce statistical diagnostics on the convergence of the simulation
BIE::EnsembleStat	Caches an group of posterior states in a vector and provides member functions to characterize the posterior from this distribution and produce statistical diagnostics on the convergence of the simulation
eqcoord	Comparison object for coordinates
eqhkey	Comparison object for histogram hash key
eqivector	Comparison for hash in color-magnitude diagram
eqpopkey	Comparison function for population hash
eqstr	For hash_map/s that use std::string as key What this means is that it'll treat <key,value> pairs with same string key as equivalent
BIE::EvalExprException	Handle eval expression related exceptions in Cli
BIE::EvaluationRequest	Request model evaluation
Expr	Abstract class for expressions in CLI
FileBackend	FileBackend: Implements file-backed backend
BIE::FileCreateException	Handle file creation related exceptions
BIE::FileFormatException	Handle file format related exceptions for DataStreams
BIE::FileNotExistException	Handle file not exist related exceptions
BIE::FileOpenException	Handles open file related exceptions
BIE::filterIn	Structure that holds a description of a filter input
BIE::filterOut	Structure that holds a description of a filter output field
BIE::FivePointIntegration	Integrate using just the corners and middle of a tile
ForStatement	Handles for-statements in the command line interpreter
BIE::Frontier	Used to represent a frontier in a tessellation tree
BIE::FrontierExpansionHeuristic	When presented with the possible expansion (increase of resolution) of a node in the tessellation tree, tree expansion heuristics decide whether the expansion is worthwhile
BIE::GalaxyModelND	Simple test galaxy model with one flux, one color and no caching
BIE::GalaxyModelNDCached	Simple test galaxy model with one flux and no caching
BIE::GalaxyModelOneD	Simple test galaxy model with one flux and line-of-sight caching
BIE::GalaxyModelOneDCached	Simple test galaxy model with one flux and caching
BIE::GalaxyModelOneDHashed	Simple test galaxy model with one flux and hash map caching
BIE::GalaxyModelTwoD	Simple test galaxy model with one flux, one color and no caching
BIE::GalaxyModelTwoDCached	Simple test galaxy model with one flux and no caching
BIE::GaussianDist	Gaussian distribution with specified mean and variance
BIE::GaussTest2D	A "user-defined" likelihood function for testing a image object similar to a galaxy image but without any intrisic magnitude
BIE::GaussTestLikelihoodFunction	A "user-defined" likelihood function for testing
BIE::GaussTestLikelihoodFunctionMulti	A "user-defined" likelihood function for testing
BIE::GaussTestMultiD	A "user-defined" likelihood function for testing
BIE::GelmanRubinConverge	Convergence class based on multiple chain analyses as desribed in Gelman and Rubin (1992)
BIE::GetTypeException	Can not retrieve data type
global_table_struct	This structure is used to declare an array containing details of CLI's global variables
GlobalTable	This class reads, sets and prints CLI's global variable values
BIE::GPL_record	Structure for sorting rectangular grid output
hash< const std::string >	Hash function for const string
hash< coordPair >	Hash object for galaxy model coordinates
hash< HistoKey >	Hash object for multidimensional histogram
hash< PopKey >	Hash object for PopKey (population-element) hash
hash< std::string >	Here's some useful code for dealing with the fact that the STL doesn't supply hash function for std::string class
hash< std::string const >	The following three are already defined in the std::tr1 namespace No idea why the forth variant isn't declared
hash< vector< int > >	Hash object for color-magnitude diagram hashmap has to be specialized in namespace it was defined in
bie::hashers< _Key, _Tp, _Hash, _Pred, _Alloc >	Type definitions for hash maps
BIE::Histogram1D	This class is used to create one dimensional histograms
HistogramCache	Hash implementation of histogram for sparsely populated histograms
BIE::HistogramND	General n-dimensional histogram (test)
BIE::HistogramNDCache	General n-dimensional histogram implemented in terms of a chained hash
BIE::HistogramNDCacheColor	Histgram
HistoKey	Key object for cache implementation of a multidimensional histogram
BIE::ImpossibleStateException	Exception used by LikelihoodComputation to indicate an impossible state
BIE::InappropriateDistributionException	This distribution is incompatible with its application
BIE::InitEvaluationRequest	Pendingrequests array is initialized properly
BIE::InitialMixturePrior	Prior for mixture model
BIE::InitialMixturePriorPoisson	Prior for mixture model
input_redirector	Data from GUI to cli via server
BIE::InsertPositionException	Handle insert position related exceptions in DataStreams
BIE::Integration	Abstract helper class to perform two dimensional quadrature of a model over a cell
BIE::InternalError	Used when execution reaches a point it should not reach
BIE::InvalidFrontierException	Exception used when the specified frontier is not valid in the context is is being used in
BIE::InvalidStreamIDException	Handle invalid stream related exceptions in DataStreams
BIE::InverseMuFilter	Inverse Mu Filter: transform from power of to (see MuFilter)
BIE::KdTessellation	Rectangular tessellation using a kd-tree
BIE::KSDistance	The KS statistic offers a way of comparing two one dimensional distributions, and gives the probability that two distributions come from the same underlying distribution
BIE::KSDistanceException	Handle KDDistance related exceptions
BIE::KSDistanceHeuristic	KS Distance based heuristic
BIE::LegeIntegration	Gauss-Legendre integration in two-dimensional cell
BIE::LikelihoodComputation	Abstract base class for Likelihood computation
BIE::LikelihoodComputationMPI	Override constructor and Likelihood to implement MPI
BIE::LikelihoodComputationMPITP	Override constructor and Likelihood to implement MPI
BIE::LikelihoodComputationSerial	Serial implmentation of Likelihood computation
BIE::LikelihoodFunction	This abstract class defines allows the arbitrarily defined likelihood functions to be used by internal classes and to be easily defined to the system by the user
BIE::LikeState	The likelihood evaluation and its state status flag
LoadEngine	Abstract class for loading an archive
LoadManager	LoadManager: Deals with nitty-gritty bits of persistence mechanism
BIE::LogBaseNFilter	Log Base N Filter: Computes the log with base N (argument to constructor) of the input x
BIE::LogFilter	Log Filter: Computes the natural logarithm of the input x
BIE::MappedGrid	Simple rectangular, non-hierarchical, tessellation defined according to an a priori mapping
BIE::MaxFilter	Max Filter: Computes the max of the input set x
BIE::MCAlgorithm	Implements a single MCMC step (Abstract)
BIE::MethodCallOnNonObjectException	Thrown when an method is called for an object that does not exist
BIE::MethodDiffArgException	Handle method has different arguments related exceptions in cli
BIE::MethodDiffRetTypeException	Handle method has different type related exceptions in cli
BIE::MethodNotExistException	Handle method not exist related exceptions in cli
MethodTable	MethodTable: This class is our form of a reflective meta-object
MethodTable::AmbiguousCallException	Parser does not know which method to call
MethodTable::ArgumentMismatchException	Argument does not match defined type
MethodTable::NoConstructorException	I don't have a constructor!
MethodTable::NoSuchClassException	Class has not been defined
MethodTable::NoSuchMethodException	CLI does not know about the requested method
MethodTable::ReturnTypeException	Incorrect return type
BIE::MetropolisHastings	Implements standard Metropolis Hastings MCMC step
BIE::MetropolisHastingsException	Exception generated for bad Metropolis Hastings proposal input files
BIE::MHWidth	Abstract base class for selecting a Metropolis-Hastings proposal width
BIE::MHWidthEns	Selecting a Metropolis-Hastings proposal width from an Ensemble
BIE::MHWidthOne	Selecting a Metropolis-Hastings proposal width from a single prior
BIE::MinFilter	Min Filter: Computes the min of the input set x
BIE::MixPriorTypeException	Handle mix prior type related exceptions
BIE::MixturePrior	Abstract class
BIE::Model	Abstract: determines partial distribution of source density for given cell
BIE::ModelEvaluationRequest	Hold a request for the evaluation of a model at a point
BIE::ModelPops	Predefined star formation rate models
BIE::MonoNode	Special Node sub class for the case where nodes have one child (e.g
BIE::MPICommunicationSession	MPI Communication Session: For sending/receiving MPIStreamFilter data using via MPI
BIE::MPIStreamFilter	MPI Stream Filter: Buffers the output to send via MPI
BIE::MuFilter	Mu Filter: transform from angle to power of
BIE::MultiDistribution	Defines a container of distributions (number specified to start and list of pointers passed to constructor)
BIE::MultipleChains	Runs the user-specified number of chains in parallel using the user-specified Monte Carlo algorithm (mca)
BIE::MuSquareTile	SquareTile with mapping in Y-direction
BIE::NameClashException	Handle name clash related exceptions in DataStreams
BIE::NDPopCachedModel	Cache object for multidimensional population model
BIE::NetCDFException	Handles errors when using the NetCDF library
BIE::NetCDFFormatException	Handles cases where NetCDF format does not meet expectations
BIE::NoBinnedDistributionException	This is not a binned distribution as expected
BIE::Node	Node class for the tessellation tree
BIE::NoPointDistributionException	Exception used when distribution type is not implemented
BIE::NormEvaluationRequest	Evaluate the normalization for the model
NoSuchArchiveTypeException	Exception used when trying to instantiate an unknown archive type
BIE::NoSuchConnection	Handle no such connection related exceptions in DataStreams
BIE::NoSuchDistributionException	Exception used when distribution type casting fails
BIE::NoSuchFieldException	Handle No such field related exceptions in DataStreams
BIE::NoSuchFilterInputException	Handle No such filter related exceptions in DataStreams
BIE::NoSuchFilterOutputException	Handld No such filter output related exceptions in DataStreams
NoSuchSessionException	User has requested a session that does not exist
NoSuchUserStateException	Exception used when trying to restore an object that does not exist
NoSuchUserStateVersionException	Exception used when trying to restore an object version that does not exist
NoSuchVersionException	The archive does not correpsond to known version
BIE::NotRootException	Handle not root related exceptions in DataStreams
BIE::NotScalarInputException	Expected a scalar but didn't get one
BIE::NotSetInputException	Detected error in setting input
BIE::NoValueException	Handle No value related exceptions in dataStreams
BIE::NullDistribution	An eternally empty distribution
BIE::NullModel	Simply a place holder for simulations that do not need a model, e.g
BIE::OneBin	A distribution consisting of a single bin
output_redirector	Data out from cli to GUI via server
BIE::PairIndex	PairIndex saves key, index pair for finding the probability given the state
BIE::ParallelChains	Implements parallel temperering or the parallel hierarchical sampler
Persistence_NameInUseException	Exception used to complain about a name already being used
PersistenceControl	PersistenceControl
PersistenceDirException	Exception used when we cannot create a sub directory in the persistence data dir
BIE::PFSimulation	Sequential Monte Carlo Particle Filter sampler
BIE::PointDistribution	Sample distribution with individual points
BIE::PointIntegration	Degenerate integrator, a delta function if you like
BIE::PointLikelihoodFunction	The default point likelihood function
BIE::PointTessellation	A pseudo tessellation to support point bayesian simulation
BIE::PointTile	Defines a degenerate tile containing a single point
BIE::PopCache	Data object for population cache
BIE::PopCacheF	Cache object for population model
BIE::PopCacheJMC	Data object for population cache
BIE::PopCacheSF	Cache object for population model with star formation
PopKey	Hold a population table entry
BIE::PopModelCache	Simple test galaxy model with one flux, one color and no caching
BIE::PopModelCacheF	Exponential/Sech^2 disk mixture model in flux^n or flux*color^{n-1} space
BIE::PopModelCacheJMC	Simple test galaxy model with one flux, one color and no caching
BIE::PopModelCacheSF	Exponential/Sech^2 disk mixture model in flux^n or flux*color^{n-1} space
BIE::PopModelND	Simple test galaxy model with one flux, one color and no caching
BIE::Populations	Binned isochrone population models
BIE::PopulationsApp	Binned isochrone population models with distance moduli
BIE::PosteriorProb	Print out value of posterior probability for a prompted input state
BIE::PostMixturePrior	Prior for mixture model
BIE::PowerFilter	Computes the result of raising one real input field to an exponent
PrintStatement	This class handles some of the print statements made in CLI
BIE::Prior	Implement Gaussian, uniform and Weibull priors for a multiple component Bayesian prior
BIE::PriorException	Handle prior related exceptions
BIE::ProductFilter	Product Filter: Computes the product of two real input fields
BIE::PSanityFilter	PSanity Filter: Checks the sanity of the model and data by determining whether events exist that have zero probability The input fields for this filter are "data" and "theory"
BIE::QuadGrid	A hierarchical, recursive, rectangular tessellation of space
BIE::QuadNode	Special Node sub class for the case where nodes have four children (e.g
BIE::QuadTreeIntegrator	Cubature algorithm
BIE::QuadTreeIntegrator::RootVars	Root node for quadtree integrator
BIE::QuantileFilter	Quantile Filter: Computes a set of quantiles for the stream
BIE::RandomDump	Make an XML "archive" containing the BIEgen state
BIE::RecordBuffer	Holds buffers for each field in a record type
BIE::RecordInputStream	Record input streams are used to read a series of records from one or more sources
BIE::RecordInputStream_Ascii	Reads record input streams from ascii files
BIE::RecordInputStream_Binary	Reads record input streams from a binary file
BIE::RecordInputStream_MPI	Make an input filter from an MPI communicated data stream
BIE::RecordInputStream_NetCDF	A record stream that reads from a NetCDF file
BIE::RecordOutputStream	Record output streams are used to write a series of records to one or more sources
BIE::RecordOutputStream_Ascii	A record output stream that writes to an ascii file
BIE::RecordOutputStream_Binary	A record output stream that writes to a binary file
BIE::RecordOutputStream_NetCDF	A record output stream that writes to an NetCDF file
BIE::RecordStream	RecordStream: An abstract class that defines basic operations like type queries and buffer lookup for streams of records (either input or output)
BIE::RecordStreamFilter	RecordStreamFilter objects can insert new fields into a stream by performing some computation on existing fields
BIE::RecordType	Record Types define a set of (name, type) pairs like a C-struct declaration
BIE::RecordType::field	This structure holds pairs of fieldname and fieldtype pairs
BIE::ResumeLogException	Exception generated for logging error on resume
BIE::ReversibleJump	Implements Green's Reversible jump MCMC method without split & combine steps
BIE::RPhiFilter	Compute r, phi from x, y coordinates
BIE::RunOneSimulation	Simulate the posterior defined Simulation instance
BIE::RunSimulation	An abstract class that defines properties for run different simulation sub classes
BIE::SampleDistribution	Abstract: estimate distribution from accumulated data
SaveEngine	Abstract class for saving a serialized archive
SaveManager	SaveManager: Deals with nitty-gritty bits of persistence mechanism
BIE::ScaleFilter	Scale Filter: Multiplies an input field by a scaling (constant) factor
BIE::Serializable	The is the base class for a serializable class using boost
SimpleExpr	Handles literals, variables and single dimension arrays in the cli interpreter
BIE::SimpleGalaxyModel	A simple test galaxy model
BIE::SimpleStat	Simple case of a distribution: running mean and std dev with distribution provided by multivariate Gaussian probability
BIE::Simulation	Base class for an MCMC simulation
BIE::SineFilter	Sine Filter: Computes the cosine of the input x
BIE::SplatModel	A simple test model based on 2-dim Gaussian splats
BIE::SplatModel1d	A simple test model based on 1-dim Gaussian splats
BIE::SplatModel3	A simple test model based on 2-dim Gaussian splats
BIE::SplatModel3dv	A simple test model based on 2-dim Gaussian splats
BIE::SplatModelNdv	A simple test model based on 2-dim Gaussian splats
BIE::SquareTile	Defines a rectangular tile
BIE::State	The vector of state parameters and its current active length which may vary for storage efficiency
BIE::StateBoundsException	Exception generated for bad State bounds
BIE::StateCache	StateCache maintains a list of MCMC states and allows sampling and searching on the list by mixture subspace
BIE::StateCreateException	Exception generated for bad State dimension
BIE::StateData	StateData of the posterior simulation including the posterior probability, the component weights and parameter vectors
StateHistory	This class is used to read and write archives of the CLI command history
StateHistory_CLI	Read and write archives of the CLI command history
StateHistory_Test	StateHistory_Test:
Statement	Abstract class that holds CLI statements
StateMetaInfo	Abstract class for gathering and serializing metadata for the current session
StateMetaInfo_CLI	Cache the meta info about the currently invoked CLI
StateMetaInfo_Test	A test implementation of the StateMetaInfo class
StateTransClosure	StateTransClosure
StateTransClosure_CLI	StateTransClosure_CLI
StateTransClosure_Test	StateTransClosure_Test
BIE::StatisticsFilter	Statistics Filter: Computes the mean of a set of reals
StdCandle	Gaussian distributed standard candle model class
BIE::StreamInheritanceException	Handles stream inheritance related exceptions in DataStreams
BIE::StringBufferOverflowException	Handles overflow of string buffers
BIE::SubsampleConverge	Convergence class based on the subsampling algorithm of Giakoumatos, Vrontos, Dellaportas and Politis, "An MCMC Convergence Diagnostic using Subsampling" (1999) which generalizes Gelman and Rubin (1992)
BIE::SubtractionFilter	Subtraction Filter: Computes the result of subtracting one real input from another
BIE::SumFilter	Sum Filter: Computes the sum of a set of reals
SymTab	Symbol Table: Stores the values of the variables defined by the user in the cli command interpreter
Table	Performs linear interpolation and 2-point derivative computation on a table
BIE::TemperedDifferentialEvolution	Implements the Differential Evolution (DE) algorithm (see DifferentialEvolution) including Tempered Transistion steps every tfreq steps (see TemperedSimulation)
BIE::TemperedSimulation	Implements Tempered Transitions MCMC method proposed by Radford Neal
BIE::Tessellation	An immutable tessellation of tiles, possibly hierarchical
BIE::Tessellation::compx	Compares the x values in two twodcoords structures
BIE::Tessellation::compxy	Compares both x and y values in two twodcoords structures for equality
BIE::Tessellation::compy	Compares the y values in two twodcoords structures
BIE::Tessellation::hashCoords	Hash a twodcoords struct into a single integer by Xoring the bits!
BIE::TessellationOverlapException	Handles tessellation overlap related exceptions
BIE::TessToolController	Main thread for TessTool GUI and visualizer
BIE::TessToolDataStream	Tess Tool Data Stream: Base class for receiving data by Tess Tool
BIE::TessToolException	Exception used by TessTool
BIE::TessToolGPL	Data output handler (not threaded)
BIE::TessToolGUI	Main thread for GTK TessTool GUI
BIE::TessToolReader	Tess Tool Reader: For setting up receiving data by Tess Tool
BIE::TessToolReceiver	Tess Tool Receiver: For setting up receiving data by Tess Tool
BIE::TessToolSender	Tess Tool Sender: For setting up sending/receiving data from Tess Tool
BIE::TessToolVTK	TessTool thread for managing the rendered scene
BIE::TessToolWriter	Tess Tool Writer: For setting up receiving data by Tess Tool
TestCheckpointManager	This checkpoint manager is for testing only and is used by test routines
TestLoadManager	TestLoadManager: Deals with nitty-gritty bits of persistence mechanism
TestSaveManager	TestSaveManager: Deals with nitty-gritty bits of persistence mechanism
TestUserState	Manage state inforation of a user-defined persistant object
BIE::thrd_pass_LikeComp	Helper class to pass info to threaded member
BIE::Tile	Defines a tile for tessellations
BIE::TileIDException	Exception used when tile id is invalid
BIE::TileMasterWorkerThread	A helper class that holds a worker thread that runs on the tile master, so the tile master can help do the work when it's not busy doing something else
BIE::TileMPIThread	A helper class that handles all of the MPI communication for the tile group master processor in a tile_point MPI simulation
BIE::TileRequestHandlerThread	A helper class that handles work requests generated by integrators and replies to those requests from worker processes
TimeElapsed	This class is a container for time results
Timer	A general stopwatch-type timer class
BIE::TSLog	Wall clock timing for use in LikelihoodComputationMPITP
BIE::twodcoords	Class to hold two dimensional coordinates
boost::serialization::type_info_implementation< __gnu_cxx::hash_map< Key, Data, HashFn, Compare, Allocator > >	The GNU C++ hash map
boost::serialization::type_info_implementation< const __gnu_cxx::hash_map< Key, Data, HashFn, Compare, Allocator > >	The typeinfo definition for the GNU C++ hash map
boost::serialization::type_info_implementation< const std::pair< Key, Data > >	The typeinfo definition for the GNU C++ const key-data pair
boost::serialization::type_info_implementation< std::pair< Key, Data > >	The typeinfo definition for the GNU C++ key-data pair
BIE::TypedBuffer	For holding a value that has a basic type
BIE::TypedBuffer_Bool	Boolean buffer
BIE::TypedBuffer_BoolArray	Array of boolean values for CLI
BIE::TypedBuffer_Int	Integer buffer
BIE::TypedBuffer_IntArray	Integer array for CLI
BIE::TypedBuffer_Real	Real buffer
BIE::TypedBuffer_RealArray	For CLI to handle arrays (real)
BIE::TypedBuffer_String	String-typed buffer
BIE::TypeException	Handle Type related exceptions in DataStreams
BIE::TypeMisArgException	Handle type mis arguments related exceptions in cli
BIE::TypeMisMatchException	Handle type mismatch related exceptions in cli
BIE::TypeNotSupportException	Handle type not support related exceptions
BIE::UniformDist	Uniform distribution between (a, b)
BIE::UniversalTessellation	A pseudo tessellation that has only one node with a single tile consisting of the entire real plane
BIE::UnusableFilterException	Handle unusable filter related exceptions in DataStreams
UserState	Tracks the information pertinent to serialize user's simulation
BIE::VarNotExistException	Handle variable not exist related exceptions in cli
BIE::vmanip	Helper class to manipulate the contents clivector types from within the CLI
BIE::vtkBIECallback	Call back for picking tiles
BIE::vtkGtkCallback	VTK call back for tile picker
vtkGtkRenderWindowInteractor	GTK implementation of the VTK render window interactor
BIE::WeibullDist	Weibull distribution with specified scale and shape parameters