BIE Overview Quick Start Theoretical overview Available methods Parallel chains Computation engine Command Line Interface Graphical User Interface Assigning Output Visualization tool Data handling Software technology Parallel debugging Results to date Recent developments Links User guide Future features Project goals Project Team Copyright and license

/home/weinberg/src/BIE/include/ReversibleJump.h // This is really -*- C++ -*- #ifndef ReversibleJump_h #define ReversibleJump_h #include "Serializable.h" #include <MCAlgorithm.h> namespace BIE { class MixturePrior; //+ CLICLASS ReversibleJump SUPER MCAlgorithm class ReversibleJump : public MCAlgorithm { private: bool birth_death; MixturePrior *_prior0; public: static double BPROB; //+ CLICONSTR int double MixturePrior* ReversibleJump(int mmax, double lambda, MixturePrior *p); ~ReversibleJump(); //+ CLIMETHOD void TestModeOn void TestModeOn(); //+ CLIMETHOD void TestModeOff void TestModeOff(); //+ CLIMETHOD void SetBirthProb double void SetBirthProb(double p) { BPROB = min<double>(1.0, max<double>(0.0, p)); } virtual void GetNewState(Simulation* sim, Chain* ch); virtual void ComputeNewState(Simulation* sim, Chain* ch); virtual double ComputeCurrentState(Simulation* sim, Chain* ch); virtual double ComputeState(Simulation* sim, Chain* ch); virtual bool Sweep(Simulation* sim, Chain* ch); virtual void PrintAlgorithmDiagnostic(Simulation* sim); protected: vector<double> Poisson; int Mmax; double Lambda; int GenPoisson(); // AUTO GENERATED BY ../persistence/autopersist.py protected: ReversibleJump() {} private: friend class boost::serialization::access; template<class Archive> void serialize(Archive & ar, const unsigned int version) { this->pre_serialize(ar, version); try { ar & BOOST_SERIALIZATION_BASE_OBJECT_NVP(MCAlgorithm); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(birth_death); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(_prior0); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(BPROB); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(Poisson); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(Mmax); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } try { ar & BOOST_SERIALIZATION_NVP(Lambda); BIE_CATCH_BOOST_SERIALIZATION_EXCEPTION; } this->post_serialize(ar, version); } }; } BIE_CLASS_TYPE_INFO(BIE::ReversibleJump) BIE_CLASS_EXPORT_KEY(BIE::ReversibleJump) #endif